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Pyrobaculum aerophilum splicing endonuclease
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 298 0.5M LiSO4, 15% PEG8000, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.37 48.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.762 α = 90 b = 70.726 β = 90 c = 131.024 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 95.9 0.05 20.6 8 72101 69133 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 93.4 0.329 4 6.6 6611
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.7 33.71 1 69133 65559 3500 95.92 0.2119 0.2119 0.20975 0.2196 0.25157 0.2581 RANDOM 25.906
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.194 r_dihedral_angle_4_deg 17.488 r_dihedral_angle_3_deg 16.451 r_dihedral_angle_1_deg 7.666 r_scangle_it 3.753 r_scbond_it 2.524 r_mcangle_it 1.891 r_angle_refined_deg 1.711 r_mcbond_it 1.147 r_nbtor_refined 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.194 r_dihedral_angle_4_deg 17.488 r_dihedral_angle_3_deg 16.451 r_dihedral_angle_1_deg 7.666 r_scangle_it 3.753 r_scbond_it 2.524 r_mcangle_it 1.891 r_angle_refined_deg 1.711 r_mcbond_it 1.147 r_nbtor_refined 0.32 r_symmetry_hbond_refined 0.242 r_nbd_refined 0.225 r_symmetry_vdw_refined 0.181 r_chiral_restr 0.127 r_xyhbond_nbd_refined 0.12 r_bond_refined_d 0.014 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4479 Nucleic Acid Atoms Solvent Atoms 443 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SHARP phasing