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Rhamnose-binding lectin CSL3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.9 291 15% PEG8000, 50mM potassium phosphate, pH4.9, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.32 47.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.04 α = 90 b = 74.602 β = 90 c = 94.065 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 mirrors 2008-07-07 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD RIGAKU JUPITER 210 mirrors 2008-07-07 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1.00 SPring-8 BL38B1 2 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 1.07253, 1.06962, 1.09141 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.9 8 96.5 0.067 13.1 31559 30454
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.9 1.97 91 0.22 1.9 2837
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 8 28889 1538 100 0.19258 0.19062 0.2007 0.22976 0.2093 RANDOM 23.77
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.65 -0.45 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.696 r_dihedral_angle_4_deg 9.791 r_dihedral_angle_3_deg 8 r_dihedral_angle_1_deg 2.608 r_scangle_it 2.244 r_scbond_it 1.432 r_angle_refined_deg 1.42 r_mcangle_it 0.983 r_mcbond_it 0.575 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.696 r_dihedral_angle_4_deg 9.791 r_dihedral_angle_3_deg 8 r_dihedral_angle_1_deg 2.608 r_scangle_it 2.244 r_scbond_it 1.432 r_angle_refined_deg 1.42 r_mcangle_it 0.983 r_mcbond_it 0.575 r_nbtor_refined 0.299 r_symmetry_hbond_refined 0.189 r_symmetry_vdw_refined 0.186 r_nbd_refined 0.185 r_xyhbond_nbd_refined 0.121 r_chiral_restr 0.087 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2988 Nucleic Acid Atoms Solvent Atoms 497 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling MLPHARE phasing