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Crystal structure of TTHA1623 from thermus thermophilus HB8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.3 293 100mM sodium cacodylate, 30% PEG200, 200mM zinc acetate, PH7.3, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K
Crystal Properties Matthews coefficient Solvent content 2.9 57.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.136 α = 90 b = 114.122 β = 90 c = 114.711 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 2004-12-10 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD RIGAKU JUPITER 210 2004-12-10 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 SPring-8 BL26B1 2 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 SPring-8 BL26B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.2 50 99.4 26556
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.2 40.46 24819 1313 97.8 0.18982 0.18773 0.1885 0.22896 0.232 RANDOM 16.312
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.547 r_dihedral_angle_4_deg 17.487 r_dihedral_angle_3_deg 13.816 r_dihedral_angle_1_deg 6.122 r_scangle_it 2.222 r_scbond_it 1.457 r_angle_refined_deg 1.225 r_mcangle_it 0.956 r_mcbond_it 0.573 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.547 r_dihedral_angle_4_deg 17.487 r_dihedral_angle_3_deg 13.816 r_dihedral_angle_1_deg 6.122 r_scangle_it 2.222 r_scbond_it 1.457 r_angle_refined_deg 1.225 r_mcangle_it 0.956 r_mcbond_it 0.573 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.205 r_nbd_refined 0.187 r_xyhbond_nbd_refined 0.114 r_symmetry_hbond_refined 0.106 r_chiral_restr 0.074 r_metal_ion_refined 0.074 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3061 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms 14
Software Software Software Name Purpose SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling