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Carbonmonoxy Sperm Whale Myoglobin at 120 K: Laser on [810 min]
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MBC PDB ENTRY 1MBC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 batch 6 293 2.4M Ammonium sulfate, 10mM TrisHCl, 100mM Sodium phosphate, pH 6.0, batch, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.89 34.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.462 α = 90 b = 30.714 β = 105.62 c = 63.932 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD MAR CCD 165 mm 2007-05-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW14A 0.827 Photon Factory AR-NW14A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.21 50 95.2 0.054 10.6 3.5 37777 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.21 1.25 61 0.429 2.1 2402
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1MBC 1.21 20.02 37763 1895 95.89 0.148 0.146 0.1446 0.191 0.188 RANDOM 15.104
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.01 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.134 r_dihedral_angle_4_deg 19.117 r_dihedral_angle_3_deg 14.094 r_sphericity_free 10.413 r_scangle_it 6.37 r_sphericity_bonded 5.814 r_dihedral_angle_1_deg 4.849 r_scbond_it 4.542 r_mcangle_it 3.314 r_rigid_bond_restr 2.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.134 r_dihedral_angle_4_deg 19.117 r_dihedral_angle_3_deg 14.094 r_sphericity_free 10.413 r_scangle_it 6.37 r_sphericity_bonded 5.814 r_dihedral_angle_1_deg 4.849 r_scbond_it 4.542 r_mcangle_it 3.314 r_rigid_bond_restr 2.68 r_mcbond_it 2.3 r_angle_refined_deg 2.015 r_metal_ion_refined 0.515 r_nbtor_refined 0.32 r_nbd_refined 0.309 r_symmetry_vdw_refined 0.159 r_chiral_restr 0.144 r_symmetry_hbond_refined 0.136 r_xyhbond_nbd_refined 0.129 r_bond_refined_d 0.022 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1217 Nucleic Acid Atoms Solvent Atoms 155 Heterogen Atoms 55
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling