☰ Navigation Tabs
Crystal structure of human F-spondin reeler domain (fragment 2)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ZOT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 0.2M bis-tris (pH 5.5), 0.4M ammonium acetate, 25% polyethylene glycol(PEG) 3350, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.19 43.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.253 α = 90 b = 50.518 β = 100.37 c = 63.171 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD ADSC QUANTUM 210 2007-10-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0000 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 100 94.5 0.069 15.1 3.7 48350
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.5 93.6 0.433 3.3 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2ZOT 1.45 62.14 45897 2430 94.45 0.20306 0.20203 0.2015 0.22248 0.2229 RANDOM 15.794
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.31 -0.23 1.01 -0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.733 r_dihedral_angle_4_deg 17.885 r_dihedral_angle_3_deg 11.872 r_dihedral_angle_1_deg 6.544 r_scangle_it 2.888 r_scbond_it 1.902 r_angle_refined_deg 1.293 r_mcangle_it 1.283 r_mcbond_it 0.802 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.733 r_dihedral_angle_4_deg 17.885 r_dihedral_angle_3_deg 11.872 r_dihedral_angle_1_deg 6.544 r_scangle_it 2.888 r_scbond_it 1.902 r_angle_refined_deg 1.293 r_mcangle_it 1.283 r_mcbond_it 0.802 r_nbtor_refined 0.307 r_nbd_refined 0.208 r_symmetry_vdw_refined 0.197 r_symmetry_hbond_refined 0.16 r_xyhbond_nbd_refined 0.12 r_chiral_restr 0.088 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2195 Nucleic Acid Atoms Solvent Atoms 220 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing