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Oxidoreductase NmDsbA3 from Neisseria meningitidis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 294 20% PEG4000, 0.1M Tris, pH8.0, 0.2M sodium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.19 43.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.469 α = 90 b = 88.531 β = 106.87 c = 84.295 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2007-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 0.97939 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 94 0.048 43.3 5.2 34110 1 1 42
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.36 65 0.278 5 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 29.81 30543 1708 94.54 0.20927 0.20628 0.2488 0.26338 0.2916 RANDOM 53.626
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.41 0.19 -0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.9 r_dihedral_angle_4_deg 20.66 r_dihedral_angle_3_deg 18.613 r_dihedral_angle_1_deg 5.48 r_scangle_it 2.055 r_scbond_it 1.498 r_angle_refined_deg 1.197 r_mcangle_it 0.803 r_mcbond_it 0.606 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.9 r_dihedral_angle_4_deg 20.66 r_dihedral_angle_3_deg 18.613 r_dihedral_angle_1_deg 5.48 r_scangle_it 2.055 r_scbond_it 1.498 r_angle_refined_deg 1.197 r_mcangle_it 0.803 r_mcbond_it 0.606 r_nbtor_refined 0.301 r_nbd_refined 0.201 r_symmetry_vdw_refined 0.191 r_symmetry_hbond_refined 0.17 r_xyhbond_nbd_refined 0.136 r_chiral_restr 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5863 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing