X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2OMF 

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.9958.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 116.867α = 90
b = 116.867β = 90
c = 114.331γ = 120
Symmetry
Space GroupP 63

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152007-11-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97935APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1399.90.0768.317885-3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2OMF3101.021692589699.960.266970.265550.29392RANDOM48.67
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-5.38-2.69-5.388.07
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.323
r_dihedral_angle_3_deg15.309
r_dihedral_angle_4_deg5.907
r_dihedral_angle_1_deg5.454
r_angle_refined_deg0.976
r_scangle_it0.748
r_mcangle_it0.729
r_scbond_it0.471
r_mcbond_it0.4
r_nbtor_refined0.301
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.323
r_dihedral_angle_3_deg15.309
r_dihedral_angle_4_deg5.907
r_dihedral_angle_1_deg5.454
r_angle_refined_deg0.976
r_scangle_it0.748
r_mcangle_it0.729
r_scbond_it0.471
r_mcbond_it0.4
r_nbtor_refined0.301
r_nbd_refined0.183
r_symmetry_hbond_refined0.157
r_symmetry_vdw_refined0.148
r_xyhbond_nbd_refined0.127
r_chiral_restr0.066
r_bond_refined_d0.007
r_gen_planes_refined0.002
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5294
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
SCALEPACKdata scaling
MOLREPphasing