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C4S dCK variant of dCK in complex with L-dA+ADP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 1.0M Sodium Citrate, 100mM Hepes, pH7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.28 46.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.73 α = 90 b = 79.73 β = 90 c = 93.53 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2006-10-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 30 99.5 0.111 13.9 9.1 30274 30274
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.76 1.87 97.6 0.346 6 7.8 4686
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Rigid body refinement THROUGHOUT 2.1 30 16276 16276 1834 99.63 0.18693 0.17937 0.1812 0.2568 0.2543 RANDOM 32.701
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.08 1.08 -2.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.334 r_dihedral_angle_3_deg 16.269 r_dihedral_angle_4_deg 12.334 r_dihedral_angle_1_deg 5.593 r_scangle_it 4.688 r_scbond_it 3.233 r_mcangle_it 2.143 r_angle_refined_deg 1.572 r_mcbond_it 1.282 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.334 r_dihedral_angle_3_deg 16.269 r_dihedral_angle_4_deg 12.334 r_dihedral_angle_1_deg 5.593 r_scangle_it 4.688 r_scbond_it 3.233 r_mcangle_it 2.143 r_angle_refined_deg 1.572 r_mcbond_it 1.282 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.259 r_nbd_refined 0.204 r_xyhbond_nbd_refined 0.185 r_symmetry_hbond_refined 0.142 r_chiral_restr 0.098 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1880 Nucleic Acid Atoms Solvent Atoms 86 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement SERGUI data collection XDS data reduction XDS data scaling