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Crystal structure of Hypothetical protein; probable 2-haloalkanoic acid dehalogenase from Sulfolobus tokodaii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Oil Batch 4.2 293 2M Ammonium sulfate, 0.1M Phosphate Citrate, pH4.2 (Wizard II), Oil Batch, temperature 293K
Crystal Properties Matthews coefficient Solvent content 4.34 71.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.79 α = 90 b = 104.79 β = 90 c = 70.26 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD RIGAKU JUPITER 210 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 0.97897, 0.97946, 0.9000 SPring-8 BL26B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 50 99.8 0.092 5.5 35912 35829 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.35 2.43 97.9 0.38 4.4 3517
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.4 20 29800 1584 93.18 0.21344 0.21185 0.24319 RANDOM 59.503
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.87 -0.44 -0.87 1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.969 r_dihedral_angle_4_deg 19.757 r_dihedral_angle_3_deg 19.115 r_dihedral_angle_1_deg 8.092 r_scangle_it 4.677 r_scbond_it 3.04 r_mcangle_it 2.109 r_angle_refined_deg 1.89 r_mcbond_it 1.284 r_nbtor_refined 0.328
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.969 r_dihedral_angle_4_deg 19.757 r_dihedral_angle_3_deg 19.115 r_dihedral_angle_1_deg 8.092 r_scangle_it 4.677 r_scbond_it 3.04 r_mcangle_it 2.109 r_angle_refined_deg 1.89 r_mcbond_it 1.284 r_nbtor_refined 0.328 r_nbd_refined 0.251 r_symmetry_vdw_refined 0.218 r_symmetry_hbond_refined 0.181 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.149 r_bond_refined_d 0.019 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3270 Nucleic Acid Atoms Solvent Atoms 74 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing