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Crystal Structure of Muconate Cycloisomerase from Thermotoga maritima MSB8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 OIL-BATCH 4.5 293 40%(v/v) PEG 400, 0.1M Acetate, pH 4.5 (Wizard Cryo II-38), OIL-BATCH, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.49 50.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.77 α = 90 b = 112.77 β = 90 c = 122.526 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD RIGAKU JUPITER 210 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 0.9781, 0.900, 0.9793 SPring-8 BL26B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 99.7 0.108 7 201326 200701 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 97.1 0.28 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 20 186624 9899 97.71 0.17617 0.17486 0.1809 0.20084 0.2062 RANDOM 21.454
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.41 0.41 -0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.069 r_dihedral_angle_4_deg 19.09 r_dihedral_angle_3_deg 13.14 r_dihedral_angle_1_deg 6.488 r_scangle_it 3.5 r_scbond_it 2.243 r_angle_refined_deg 1.25 r_mcangle_it 1.19 r_mcbond_it 0.834 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.069 r_dihedral_angle_4_deg 19.09 r_dihedral_angle_3_deg 13.14 r_dihedral_angle_1_deg 6.488 r_scangle_it 3.5 r_scbond_it 2.243 r_angle_refined_deg 1.25 r_mcangle_it 1.19 r_mcbond_it 0.834 r_nbtor_refined 0.309 r_nbd_refined 0.202 r_symmetry_vdw_refined 0.194 r_symmetry_hbond_refined 0.166 r_xyhbond_nbd_refined 0.108 r_chiral_restr 0.089 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10808 Nucleic Acid Atoms Solvent Atoms 1218 Heterogen Atoms 193
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing