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Crystal structure of RV0983 from Mycobacterium tuberculosis- Proteolytically active form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 289 7mg/ml protein (in 50mM Tris-HCl, 1mM dithiothreitol (DTT) (pH 7.0)), 0.1M sodium acetate (pH 4.6), 0.1M cadmium chloride, 30% PEG 400 , VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.3 46.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 149.584 α = 90 b = 89.067 β = 97.55 c = 69.408 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2004-07-30 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.979, 0.94181, 0.97923 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 76.7 93.8 0.05 24.12 7.4 76977 76977
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.99 76 0.9 0.87 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 50 57235 57235 3078 98.81 0.22765 0.22505 0.2725 RANDOM 47.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 0.47 -0.8 1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.773 r_dihedral_angle_3_deg 18.469 r_dihedral_angle_4_deg 16.934 r_scangle_it 8.083 r_dihedral_angle_1_deg 7.046 r_scbond_it 5.238 r_mcangle_it 3.175 r_mcbond_it 1.913 r_angle_refined_deg 1.565 r_symmetry_vdw_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.773 r_dihedral_angle_3_deg 18.469 r_dihedral_angle_4_deg 16.934 r_scangle_it 8.083 r_dihedral_angle_1_deg 7.046 r_scbond_it 5.238 r_mcangle_it 3.175 r_mcbond_it 1.913 r_angle_refined_deg 1.565 r_symmetry_vdw_refined 0.307 r_nbtor_refined 0.296 r_nbd_refined 0.234 r_xyhbond_nbd_refined 0.184 r_symmetry_hbond_refined 0.171 r_chiral_restr 0.108 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5593 Nucleic Acid Atoms Solvent Atoms 327 Heterogen Atoms
Software Software Software Name Purpose SHARP phasing REFMAC refinement HKL-2000 data collection HKL-2000 data reduction SCALEPACK data scaling