☰ Navigation Tabs
The crystal structure of AzoR (azoreductase) from Escherichia coli: Reduced AzoR in tetragonal crystals
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1V4B PDB ID 1V4B
Crystallization Crystal Properties Matthews coefficient Solvent content 2.53 51.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.882 α = 90 b = 91.882 β = 90 c = 51.623 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 4 2002-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 1.0000 Photon Factory BL-6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 64.96 24003
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ID 1V4B 1.7 27.5 22745 1227 96.42 0.18634 0.18476 0.1951 0.21596 0.2222 RANDOM 15.127
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.43 0.43 -0.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.024 r_dihedral_angle_4_deg 13.404 r_dihedral_angle_3_deg 11.674 r_dihedral_angle_1_deg 5.363 r_scangle_it 3.569 r_scbond_it 2.827 r_mcangle_it 1.615 r_angle_refined_deg 1.613 r_mcbond_it 1.392 r_angle_other_deg 0.956
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.024 r_dihedral_angle_4_deg 13.404 r_dihedral_angle_3_deg 11.674 r_dihedral_angle_1_deg 5.363 r_scangle_it 3.569 r_scbond_it 2.827 r_mcangle_it 1.615 r_angle_refined_deg 1.613 r_mcbond_it 1.392 r_angle_other_deg 0.956 r_symmetry_hbond_refined 0.318 r_mcbond_other 0.292 r_symmetry_vdw_other 0.213 r_nbd_refined 0.206 r_nbd_other 0.199 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.165 r_symmetry_vdw_refined 0.156 r_chiral_restr 0.093 r_nbtor_other 0.087 r_bond_refined_d 0.017 r_bond_other_d 0.009 r_gen_planes_refined 0.007 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1468 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement