☰ Navigation Tabs
Crystal structure of the Fab fragment of anti-ciguatoxin antibody 10C9 in complex with CTX3C_ABCDE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HQ4 PDB ENTRY 1HQ4, 1Z3G, 3F58, 1YEC experimental model PDB 1Z3G PDB ENTRY 1HQ4, 1Z3G, 3F58, 1YEC experimental model PDB 3F58 PDB ENTRY 1HQ4, 1Z3G, 3F58, 1YEC experimental model PDB 1YEC PDB ENTRY 1HQ4, 1Z3G, 3F58, 1YEC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 0.1M tri-sodium Citrate dihydrate, 20% iso-Propanol, 20% PEG4000, pH5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.55 51.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62 α = 90 b = 67.65 β = 90 c = 114.357 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1.0000 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 99.7 0.103 6.6 21987 20.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.38 97.2 0.337 4.7 2102
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HQ4, 1Z3G, 3F58, 1YEC 2.3 9.98 20735 2047 95.4 0.228 0.228 0.2288 0.269 0.2702 RANDOM 19
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.69 -1.59 -2.1
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 27.3 c_scangle_it 2.62 c_scbond_it 1.86 c_angle_deg 1.8 c_mcangle_it 1.78 c_mcbond_it 1.12 c_improper_angle_d 1.11 c_bond_d 0.009 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 27.3 c_scangle_it 2.62 c_scbond_it 1.86 c_angle_deg 1.8 c_mcangle_it 1.78 c_mcbond_it 1.12 c_improper_angle_d 1.11 c_bond_d 0.009 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3197 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms 43
Software Software Software Name Purpose CNS refinement ugiui data collection HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing