☰ Navigation Tabs
Crystal structure of full-length human RPA14/32 heterodimer
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1QUQ PDB ENTRY 1QUQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 5.9 293 0.95M KNa tartrate, 0.1M MES, 10mM DTT, pH 5.9, EVAPORATION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.286145 62.570122
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.46 α = 90 b = 97.46 β = 90 c = 125.64 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2004-02-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 50 95.8 0.07 16 3.1 26620 25484 1 1 90
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.98 3.1 99 0.7 1.6 3.2 2647
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1QUQ 3 50 2 2 22616 22594 1168 99.91 0.22921 0.22723 0.2687 0.2471 RANDOM 89.456
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.54 1.54 -3.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.407 r_dihedral_angle_3_deg 19.334 r_dihedral_angle_4_deg 16.551 r_dihedral_angle_1_deg 7.292 r_scangle_it 2.105 r_angle_refined_deg 1.377 r_mcangle_it 1.338 r_scbond_it 1.203 r_mcbond_it 0.74 r_nbtor_refined 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.407 r_dihedral_angle_3_deg 19.334 r_dihedral_angle_4_deg 16.551 r_dihedral_angle_1_deg 7.292 r_scangle_it 2.105 r_angle_refined_deg 1.377 r_mcangle_it 1.338 r_scbond_it 1.203 r_mcbond_it 0.74 r_nbtor_refined 0.316 r_symmetry_hbond_refined 0.239 r_nbd_refined 0.231 r_symmetry_vdw_refined 0.178 r_xyhbond_nbd_refined 0.14 r_chiral_restr 0.092 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3818 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing