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Crystal Structure of Human Monoamine Oxidase A (G110A) with Harmine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1O5W PDB ENTRY 1O5W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 277 1.6M AMMONIUM SULFATE, 100mM CITRIC ACID, pH 5.00, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.46 64.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.547 α = 90 b = 217.364 β = 90 c = 54.804 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker DIP-6040 2006-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.16 49.57 71.4 0.079 7.1 2.8 87380 31614 24.258
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.16 2.25 21.5 0.31 1.5 1.4 1454
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1O5W 2.17 44.24 30004 1608 72.6 0.19592 0.19336 0.1913 0.24358 0.2423 RANDOM 36.594
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 -0.04 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.432 r_dihedral_angle_4_deg 20.338 r_dihedral_angle_3_deg 18.153 r_dihedral_angle_1_deg 6.678 r_scangle_it 4.027 r_scbond_it 2.625 r_angle_refined_deg 1.812 r_mcangle_it 1.667 r_mcbond_it 0.973 r_nbtor_refined 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.432 r_dihedral_angle_4_deg 20.338 r_dihedral_angle_3_deg 18.153 r_dihedral_angle_1_deg 6.678 r_scangle_it 4.027 r_scbond_it 2.625 r_angle_refined_deg 1.812 r_mcangle_it 1.667 r_mcbond_it 0.973 r_nbtor_refined 0.32 r_symmetry_vdw_refined 0.279 r_symmetry_hbond_refined 0.247 r_nbd_refined 0.229 r_xyhbond_nbd_refined 0.162 r_chiral_restr 0.122 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4101 Nucleic Acid Atoms Solvent Atoms 199 Heterogen Atoms 97
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing