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Crystal Structure of Zn-bound ORF134
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.7M Zinc acetate, 0.1M Na cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.35 47.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.295 α = 90 b = 67.761 β = 90 c = 86.147 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 210 2005-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0000 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 50 99.7 0.08 15445 24.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.15 2.23 99.6 0.374
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.15 50 15445 817 99.82 0.195 0.19247 0.24676 0.236 RANDOM 28.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 1.21 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.056 r_dihedral_angle_4_deg 18.198 r_dihedral_angle_3_deg 15.625 r_dihedral_angle_1_deg 4.87 r_scangle_it 3.291 r_scbond_it 1.993 r_mcangle_it 1.222 r_angle_refined_deg 1.09 r_mcbond_it 0.724 r_symmetry_hbond_refined 0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.056 r_dihedral_angle_4_deg 18.198 r_dihedral_angle_3_deg 15.625 r_dihedral_angle_1_deg 4.87 r_scangle_it 3.291 r_scbond_it 1.993 r_mcangle_it 1.222 r_angle_refined_deg 1.09 r_mcbond_it 0.724 r_symmetry_hbond_refined 0.42 r_nbtor_refined 0.293 r_symmetry_vdw_refined 0.236 r_nbd_refined 0.198 r_xyhbond_nbd_refined 0.186 r_metal_ion_refined 0.089 r_chiral_restr 0.074 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1763 Nucleic Acid Atoms Solvent Atoms 161 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing