2Z34

Crystal structure of SpCia1/Asf1 complex with Hip1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP729325% PEG3350, 0.18M Ammonium Fluoride, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.1643.04

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 62.013α = 90
b = 48.086β = 99.25
c = 63.247γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IV++mirror2006-07-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.35097.60.0623.21659016188-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.32.3898.70.2373.21621

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2CU92.4501354373697.560.197560.194450.25408RANDOM29.602
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.65-1.12-0.480.77
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.104
r_scangle_it3.867
r_scbond_it2.342
r_mcangle_it1.794
r_angle_refined_deg1.739
r_mcbond_it0.981
r_angle_other_deg0.87
r_nbd_other0.244
r_symmetry_vdw_other0.244
r_nbd_refined0.205
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.104
r_scangle_it3.867
r_scbond_it2.342
r_mcangle_it1.794
r_angle_refined_deg1.739
r_mcbond_it0.981
r_angle_other_deg0.87
r_nbd_other0.244
r_symmetry_vdw_other0.244
r_nbd_refined0.205
r_xyhbond_nbd_refined0.184
r_symmetry_hbond_refined0.176
r_symmetry_vdw_refined0.175
r_chiral_restr0.102
r_nbtor_other0.089
r_bond_refined_d0.021
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2778
Nucleic Acid Atoms
Solvent Atoms129
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
CrystalCleardata collection
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing