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Human Wee1 kinase complexed with inhibitor PF0335770
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1X8B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 NaCL, HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.97 58.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.747 α = 90 b = 69.747 β = 90 c = 157.215 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE MAR scanner 345 mm plate osmic 2002-06-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 96.8 0.075 46 12.8 19968 19968 39
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 68.9 0.53 3.5 7.9 1377
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1X8B 2.22 41.92 18848 996 99.22 0.21795 0.21538 0.2052 0.27064 0.2648 RANDOM 47.459
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.9 0.9 -1.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.32 r_dihedral_angle_4_deg 20.481 r_dihedral_angle_3_deg 18.055 r_dihedral_angle_1_deg 7.669 r_scangle_it 4.81 r_scbond_it 3.438 r_angle_refined_deg 2.433 r_mcangle_it 2.096 r_mcbond_it 1.411 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.32 r_dihedral_angle_4_deg 20.481 r_dihedral_angle_3_deg 18.055 r_dihedral_angle_1_deg 7.669 r_scangle_it 4.81 r_scbond_it 3.438 r_angle_refined_deg 2.433 r_mcangle_it 2.096 r_mcbond_it 1.411 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.269 r_nbd_refined 0.225 r_chiral_restr 0.175 r_xyhbond_nbd_refined 0.175 r_symmetry_hbond_refined 0.137 r_bond_refined_d 0.027 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2016 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement MAR345 data collection HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing