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MURA inhibited by unag-cnicin adduct
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UAE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 292 15% PEG 4000, 100mM TRIS, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.06 40.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.127 α = 108.69 b = 80.369 β = 111.07 c = 84.871 γ = 101.17
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2006-09-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 1.03317 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 19.14 93.8 0.071 0.071 7.5 1.9 89740 84171 -3 -3 31.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.1 93.2 0.295 0.295 2.7 1.9 5854
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1UAE 2.05 19.14 79991 4202 93.8 0.19487 0.19102 0.1885 0.27068 0.2654 RANDOM 10.419
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 -0.01 -0.05 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.426 r_dihedral_angle_4_deg 18.732 r_dihedral_angle_3_deg 18.229 r_dihedral_angle_1_deg 6.827 r_scangle_it 3.319 r_scbond_it 2.196 r_angle_refined_deg 1.71 r_mcangle_it 1.269 r_mcbond_it 0.814 r_nbtor_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.426 r_dihedral_angle_4_deg 18.732 r_dihedral_angle_3_deg 18.229 r_dihedral_angle_1_deg 6.827 r_scangle_it 3.319 r_scbond_it 2.196 r_angle_refined_deg 1.71 r_mcangle_it 1.269 r_mcbond_it 0.814 r_nbtor_refined 0.314 r_symmetry_vdw_refined 0.291 r_symmetry_hbond_refined 0.256 r_nbd_refined 0.239 r_xyhbond_nbd_refined 0.193 r_chiral_restr 0.11 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12532 Nucleic Acid Atoms Solvent Atoms 932 Heterogen Atoms 192
Software Software Software Name Purpose MOLREP phasing REFMAC refinement MAR345dtb data collection MAR345 data collection XDS data scaling XSCALE data scaling