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Crystal Structure of a five site mutated Cyanovirin-N
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LOM PDB ENTRY 1LOM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 298 30% PEG 8000, 100 MM MGSO4, pH 6.00, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.18 43.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.457 α = 90 b = 38.143 β = 99.98 c = 56.039 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV MIRRORS 2005-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 55.22 87.7 0.094 11.5 1.9 19361 4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.84 42.3 0.244 3.7 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1LOM 1.8 31.44 16077 881 87.7 0.167 0.164 0.1614 0.235 0.2336 RANDOM 23.49
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.35 0.04 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.598 r_dihedral_angle_4_deg 20.522 r_dihedral_angle_3_deg 13.832 r_dihedral_angle_1_deg 6.414 r_scangle_it 3.284 r_sphericity_free 3.166 r_scbond_it 2.132 r_sphericity_bonded 1.576 r_rigid_bond_restr 1.548 r_mcangle_it 1.497
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.598 r_dihedral_angle_4_deg 20.522 r_dihedral_angle_3_deg 13.832 r_dihedral_angle_1_deg 6.414 r_scangle_it 3.284 r_sphericity_free 3.166 r_scbond_it 2.132 r_sphericity_bonded 1.576 r_rigid_bond_restr 1.548 r_mcangle_it 1.497 r_angle_refined_deg 1.23 r_mcbond_it 1.087 r_nbtor_refined 0.296 r_symmetry_vdw_refined 0.208 r_nbd_refined 0.203 r_symmetry_hbond_refined 0.19 r_xyhbond_nbd_refined 0.168 r_chiral_restr 0.086 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1537 Nucleic Acid Atoms Solvent Atoms 283 Heterogen Atoms
Software Software Software Name Purpose PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling