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Phase transition of monoclinic lysozyme crystal soaked in a 10% NaCl solution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2D4J PDB Entry 2D4J
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Dehydration induced phase transition 293 10% NaCl, temperature-regulated nitrogen gas, Dehydration induced phase transition, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.64 24.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 26.622 α = 90 b = 60.588 β = 111.44 c = 31.223 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD BRUKER SMART 6000 Montel optics 2006-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE MACSCIENCE 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 50 99.6 0.104 4.73 32860 32729
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.15 1.19 99.9 0.09 3.09 3284
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SHELX-97 THROUGHOUT PDB Entry 2D4J 1.15 25 32603 1630 0.156 0.1576 0.176 Random 9.04
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.073 s_zero_chiral_vol 0.065 s_from_restr_planes 0.032 s_angle_d 0.029 s_bond_d 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1006 Nucleic Acid Atoms Solvent Atoms 211 Heterogen Atoms 7
Software Software Software Name Purpose SHELXL-97 model building SHELXL-97 refinement SAINT data reduction SAINT data scaling SHELXL-97 phasing