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Crystal structure of the proline iminopeptidase-related protein TTHA1809 from Thermus thermophilus HB8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 293 100mM HEPES-Na, 0.85M potassium sodium tartrate tetrahydrate, pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 4.2 70.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.93 α = 90 b = 126.93 β = 90 c = 114.295 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.0000 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 51211
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 20 51211 2740 99.68 0.17812 0.17655 0.20835 0.2056 RANDOM 25.92
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.99 0.49 0.99 -1.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.734 r_scangle_it 3.154 r_scbond_it 1.76 r_mcangle_it 1.325 r_angle_refined_deg 1.229 r_angle_other_deg 0.753 r_mcbond_it 0.686 r_symmetry_vdw_other 0.306 r_nbd_other 0.247 r_nbd_refined 0.206
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.734 r_scangle_it 3.154 r_scbond_it 1.76 r_mcangle_it 1.325 r_angle_refined_deg 1.229 r_angle_other_deg 0.753 r_mcbond_it 0.686 r_symmetry_vdw_other 0.306 r_nbd_other 0.247 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.173 r_symmetry_vdw_refined 0.136 r_symmetry_hbond_refined 0.109 r_nbtor_other 0.082 r_chiral_restr 0.068 r_bond_refined_d 0.009 r_bond_other_d 0.005 r_gen_planes_refined 0.004 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4407 Nucleic Acid Atoms Solvent Atoms 413 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing