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crystal structure of ferredoxin reductase, BPHA4 (blue-semiquinone)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.4 293 2M SODIUM FORMATE, 0.1M SODIUM ACETATE, pH 5.40, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.74 55.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.288 α = 90 b = 98.288 β = 90 c = 170.066 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-01-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 15 98.6 0.054 36.5 20.8 63621
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.68 97.7 0.641 5.3 18.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION DIFFERENCE FOURIER THROUGHOUT 1.6 15 60388 3178 100 0.195 0.194 0.2333 0.22 0.2563 RANDOM 26.88
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.46 -0.23 -0.46 0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.895 r_dihedral_angle_4_deg 17.057 r_dihedral_angle_3_deg 12.523 r_dihedral_angle_1_deg 5.514 r_scangle_it 2.836 r_scbond_it 1.864 r_angle_refined_deg 1.468 r_mcangle_it 1.137 r_mcbond_it 0.726 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.895 r_dihedral_angle_4_deg 17.057 r_dihedral_angle_3_deg 12.523 r_dihedral_angle_1_deg 5.514 r_scangle_it 2.836 r_scbond_it 1.864 r_angle_refined_deg 1.468 r_mcangle_it 1.137 r_mcbond_it 0.726 r_nbtor_refined 0.308 r_symmetry_hbond_refined 0.214 r_nbd_refined 0.197 r_symmetry_vdw_refined 0.197 r_xyhbond_nbd_refined 0.123 r_chiral_restr 0.086 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2957 Nucleic Acid Atoms Solvent Atoms 288 Heterogen Atoms 97
Software Software Software Name Purpose XTALVIEW refinement REFMAC refinement ADSC data collection XDS data scaling