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Crystal structure of L-phenylalanine oxiase from Psuedomonas sp. P-501
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 293 0.1M HEPES pH 7.5, 1.7M ammonium sulfate, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.71 54.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.577 α = 90 b = 145.405 β = 90 c = 82.076 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-11-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0000 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50.77 99.4 0.081 6.5 184918
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 96.9 0.272 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 50.77 175569 9271 99.34 0.1675 0.16605 0.1747 0.19525 0.2009 RANDOM 18.826
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 0.64 -0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.231 r_dihedral_angle_4_deg 18.663 r_dihedral_angle_3_deg 11.885 r_dihedral_angle_1_deg 5.897 r_scangle_it 3.592 r_scbond_it 2.738 r_mcangle_it 1.7 r_angle_refined_deg 1.599 r_mcbond_it 1.456 r_angle_other_deg 1.073
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.231 r_dihedral_angle_4_deg 18.663 r_dihedral_angle_3_deg 11.885 r_dihedral_angle_1_deg 5.897 r_scangle_it 3.592 r_scbond_it 2.738 r_mcangle_it 1.7 r_angle_refined_deg 1.599 r_mcbond_it 1.456 r_angle_other_deg 1.073 r_mcbond_other 0.283 r_symmetry_vdw_other 0.245 r_symmetry_vdw_refined 0.225 r_nbd_refined 0.218 r_nbd_other 0.212 r_symmetry_hbond_refined 0.201 r_nbtor_refined 0.188 r_xyhbond_nbd_refined 0.168 r_chiral_restr 0.096 r_nbtor_other 0.087 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_bond_other_d 0.004 r_gen_planes_other 0.003 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10290 Nucleic Acid Atoms Solvent Atoms 1526 Heterogen Atoms 111
Software Software Software Name Purpose REFMAC refinement CNS refinement ADSC data collection MOSFLM data reduction SCALA data scaling SOLVE phasing