☰ Navigation Tabs
Bacillus amyloliquefaciens CBM33
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BEN PDB ENTRY 2BEN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4 0.1 M MMT BUFFER PH 4.0, 25% PEG-1500
Crystal Properties Matthews coefficient Solvent content 2.14 43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.523 α = 90 b = 77.713 β = 90 c = 72.457 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M MIRRORS 2012-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 49 98.3 0.11 10.9 8.1 35052 6 21.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 95.4 0.73 2.7 8.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BEN 1.8 49.05 33214 1789 98.57 0.23685 0.23444 0.2401 0.28062 0.2842 RANDOM 22.967
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.01 -1.1 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.473 r_dihedral_angle_4_deg 20.512 r_dihedral_angle_3_deg 13.418 r_dihedral_angle_1_deg 7.009 r_angle_refined_deg 1.548 r_angle_other_deg 0.976 r_chiral_restr 0.101 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_bond_other_d 0.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.473 r_dihedral_angle_4_deg 20.512 r_dihedral_angle_3_deg 13.418 r_dihedral_angle_1_deg 7.009 r_angle_refined_deg 1.548 r_angle_other_deg 0.976 r_chiral_restr 0.101 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_bond_other_d 0.004 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2792 Nucleic Acid Atoms Solvent Atoms 273 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing