☰ Navigation Tabs
High resolution AGXT_M structure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1H0C PDB ENTRY 1H0C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 15% PEG 3350, 0.1M BIS-TRIS PH 5.2, 150MM LI2SO4 AND 5% W/V OCTYL-B-D-GLUCOSIDE
Crystal Properties Matthews coefficient Solvent content 2.52 51.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.495 α = 90 b = 103.525 β = 90 c = 153.832 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2011-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 48.22 99.8 0.1 20.2 8.7 69440 25.79
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 2 99 0.54 1.4 7.7
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1H0C 1.9 45.95 69358 3507 99.82 0.1713 0.1695 0.1674 0.2043 0.1993 31.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.9646 -4.8576 -0.107
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.236 f_angle_d 1.064 f_chiral_restr 0.072 f_bond_d 0.007 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5928 Nucleic Acid Atoms Solvent Atoms 702 Heterogen Atoms 104
Software Software Software Name Purpose PHENIX refinement XDS data reduction SCALA data scaling PHASER phasing