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HIV-1 Reverse Transcriptase Y188L mutant in complex with inhibitor GSK560
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HMV PDB ENTRY 1HMV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 100MM HEPES PH7.5, 10MM SPERMIDINE, 1.1M SODIUM POTASSIUM TARTRATE
Crystal Properties Matthews coefficient Solvent content 3.2 57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.578 α = 90 b = 154.508 β = 90 c = 157.026 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH BERYLLIUM LENSES 2008-10-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 50 99.9 0.06 23.4 5.3 59250 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.39 100 0.45 4.15 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HMV 2.36 47.57 57009 1783 98.41 0.1984 0.19722 0.2032 0.23631 0.2375 RANDOM 38.099
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 0.31 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.772 r_dihedral_angle_4_deg 19.948 r_dihedral_angle_3_deg 15.108 r_dihedral_angle_1_deg 5.924 r_angle_refined_deg 1.354 r_angle_other_deg 0.85 r_chiral_restr 0.072 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.772 r_dihedral_angle_4_deg 19.948 r_dihedral_angle_3_deg 15.108 r_dihedral_angle_1_deg 5.924 r_angle_refined_deg 1.354 r_angle_other_deg 0.85 r_chiral_restr 0.072 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7728 Nucleic Acid Atoms Solvent Atoms 434 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing