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SipD from Salmonella typhimurium
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2J0N PDB ENTRY 2J0N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 PROTEIN WAS MIXED WITH SOLUTION CONTAINING 100 MM HEPES PH 7.5 AND 1.5 M LI2SO4.
Crystal Properties Matthews coefficient Solvent content 2.78 55.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.37 α = 90 b = 128.37 β = 90 c = 350.082 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH SX-125 MIRRORS 2008-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 20 96.7 0.1 13.86 7.6 34082 -3 68
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.17 92.9 0.51 3.58 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2J0N 3 19.94 34082 1635 97.1 0.229 0.229 0.2279 0.258 0.2552 RANDOM 80.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 8.59 8.59 -17.17
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 20.6 c_scangle_it 8.48 c_scbond_it 6.07 c_mcangle_it 3.82 c_mcbond_it 2.2 c_angle_deg 1.4 c_improper_angle_d 0.86 c_bond_d 0.008 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 20.6 c_scangle_it 8.48 c_scbond_it 6.07 c_mcangle_it 3.82 c_mcbond_it 2.2 c_angle_deg 1.4 c_improper_angle_d 0.86 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7094 Nucleic Acid Atoms Solvent Atoms 38 Heterogen Atoms 27
Software Software Software Name Purpose CNS refinement XDS data reduction XSCALE data scaling PHASER phasing