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CYTOCHROME C PRIME FROM ALCALIGENES XYLOSOXIDANS: AS ISOLATED L16A VARIANT AT 0.95 A RESOLUTION
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2YKZ PDB ENTRY 2YKZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 AMMONIUM SULPHATE, TRIS PH 7.5
Crystal Properties Matthews coefficient Solvent content 2.74 55.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.4 α = 90 b = 53.4 β = 90 c = 181.25 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2008-04-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0,8 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.93 46 99.8 0.06 13.6 6 103306 11.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.93 1 99.9 0.99 1.9 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2YKZ 0.95 46.22 92749 3865 100 0.13284 0.13213 0.1326 0.14968 0.1482 RANDOM 13.811
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.69 -0.34 -0.69 1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.898 r_dihedral_angle_3_deg 13.584 r_dihedral_angle_4_deg 13.189 r_dihedral_angle_1_deg 5.269 r_scangle_it 3.71 r_scbond_it 2.721 r_mcangle_it 2.108 r_angle_refined_deg 1.813 r_mcbond_it 1.378 r_rigid_bond_restr 1.206
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.898 r_dihedral_angle_3_deg 13.584 r_dihedral_angle_4_deg 13.189 r_dihedral_angle_1_deg 5.269 r_scangle_it 3.71 r_scbond_it 2.721 r_mcangle_it 2.108 r_angle_refined_deg 1.813 r_mcbond_it 1.378 r_rigid_bond_restr 1.206 r_angle_other_deg 0.991 r_mcbond_other 0.513 r_chiral_restr 0.109 r_bond_refined_d 0.017 r_gen_planes_refined 0.012 r_gen_planes_other 0.005 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 955 Nucleic Acid Atoms Solvent Atoms 354 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing