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Structure determination of the stereoselective inverting sec- alkylsulfatase Pisa1 from Pseudomonas sp.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model SwissModel SWISS MODEL SERVER
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 4 MG/ML PISA1, 18 % W/V PEG 2000, 0.42 MM SODIUM ACETATE PH 4.5 .
Crystal Properties Matthews coefficient Solvent content 2.11 41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.734 α = 90 b = 200.587 β = 90 c = 245.332 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-04-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 19.91 99.8 0.17 4.4 10.1 102022 2 53.427
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.85 100 0.8 1 9.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT SWISS MODEL SERVER 2.7 19.91 96842 5090 99.99 0.18492 0.18252 0.1782 0.23049 0.2247 RANDOM 47.746
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.26 3.3 -2.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.684 r_dihedral_angle_3_deg 19.686 r_dihedral_angle_4_deg 19.399 r_scangle_it 12.52 r_scbond_it 8.645 r_mcangle_it 5.424 r_mcbond_it 3.351 r_dihedral_angle_1_deg 2.924 r_angle_refined_deg 1.834 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.684 r_dihedral_angle_3_deg 19.686 r_dihedral_angle_4_deg 19.399 r_scangle_it 12.52 r_scbond_it 8.645 r_mcangle_it 5.424 r_mcbond_it 3.351 r_dihedral_angle_1_deg 2.924 r_angle_refined_deg 1.834 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.207 r_nbd_refined 0.203 r_chiral_restr 0.164 r_xyhbond_nbd_refined 0.142 r_symmetry_hbond_refined 0.136 r_metal_ion_refined 0.087 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 29668 Nucleic Acid Atoms Solvent Atoms 1166 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing