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Crystal structure of the dimeric BamE from E. coli
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 30% PEG 4000, 10% I-PROH, 0.1 M HEPES PH 7.5
Crystal Properties Matthews coefficient Solvent content 2.07 40.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.66 α = 90 b = 96.52 β = 134.06 c = 50.49 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 100 0.07 25.7 5.7 21093 2.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.88 99.8 0.47 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.8 22.29 21093 1111 100 0.18366 0.18121 0.2001 0.22859 0.2408 RANDOM 21.797
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.65 0.69 -0.61 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.539 r_dihedral_angle_4_deg 20.86 r_dihedral_angle_3_deg 14.555 r_dihedral_angle_1_deg 5.511 r_scangle_it 5.501 r_scbond_it 3.709 r_mcangle_it 2.54 r_rigid_bond_restr 2.502 r_angle_refined_deg 1.831 r_mcbond_it 1.548
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.539 r_dihedral_angle_4_deg 20.86 r_dihedral_angle_3_deg 14.555 r_dihedral_angle_1_deg 5.511 r_scangle_it 5.501 r_scbond_it 3.709 r_mcangle_it 2.54 r_rigid_bond_restr 2.502 r_angle_refined_deg 1.831 r_mcbond_it 1.548 r_chiral_restr 0.123 r_bond_refined_d 0.025 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1563 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHARP phasing DM phasing BUCCANEER phasing