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Structure of the N-terminal domain of BamC from E. coli
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 3.5 2 M (NH4)2SO4, 0.1 M CITRIC ACID PH 3.5
Crystal Properties Matthews coefficient Solvent content 2.21 44.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.577 α = 102.7 b = 46.631 β = 92.86 c = 60.208 γ = 118.2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 40 95.1 0.06 11.1 3.4 56570 2.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.59 93.8 0.44 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT NONE 1.55 30 56570 2994 95.82 0.19676 0.19479 0.2343 0.2842 RANDOM 15.031
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 -0.14 0.1 -0.29 0.1 0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.043 r_dihedral_angle_4_deg 23.453 r_dihedral_angle_3_deg 16.684 r_scangle_it 7.542 r_dihedral_angle_1_deg 7.433 r_scbond_it 5.422 r_mcangle_it 3.57 r_rigid_bond_restr 3.037 r_angle_refined_deg 2.53 r_mcbond_it 2.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.043 r_dihedral_angle_4_deg 23.453 r_dihedral_angle_3_deg 16.684 r_scangle_it 7.542 r_dihedral_angle_1_deg 7.433 r_scbond_it 5.422 r_mcangle_it 3.57 r_rigid_bond_restr 3.037 r_angle_refined_deg 2.53 r_mcbond_it 2.43 r_chiral_restr 0.178 r_bond_refined_d 0.028 r_gen_planes_refined 0.013 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3376 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHARP phasing DM phasing BUCCANEER phasing