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Crystal structure of fire ant venom allergen, Sol I 2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9.2 PROTEIN WAS CRYSTALLIZED FROM 35% PEG 8000, 0.1M NAACETATE, PH 9.2 .
Crystal Properties Matthews coefficient Solvent content 2.1 41.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.211 α = 90 b = 139.16 β = 90 c = 62.093 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-07-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.58 69.66 95 0.06 17.3 3.2 28662 1.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.58 2.72 86.3 0.28 3.8 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2.6 15 26886 1434 94.62 0.23887 0.23714 0.2347 0.27046 0.2599 RANDOM 29.676
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.33 -1.01 1.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.363 r_dihedral_angle_4_deg 16.98 r_dihedral_angle_3_deg 14.595 r_scangle_it 7.634 r_scbond_it 5.379 r_dihedral_angle_1_deg 4.236 r_mcangle_it 3.258 r_mcbond_it 2.12 r_angle_refined_deg 1.005 r_angle_other_deg 0.912
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.363 r_dihedral_angle_4_deg 16.98 r_dihedral_angle_3_deg 14.595 r_scangle_it 7.634 r_scbond_it 5.379 r_dihedral_angle_1_deg 4.236 r_mcangle_it 3.258 r_mcbond_it 2.12 r_angle_refined_deg 1.005 r_angle_other_deg 0.912 r_mcbond_other 0.682 r_symmetry_vdw_refined 0.241 r_nbd_refined 0.217 r_symmetry_vdw_other 0.207 r_nbtor_refined 0.171 r_symmetry_hbond_refined 0.17 r_nbd_other 0.169 r_xyhbond_nbd_refined 0.137 r_nbtor_other 0.083 r_chiral_restr 0.051 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6872 Nucleic Acid Atoms Solvent Atoms 79 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHELX phasing SHARP phasing DM phasing