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CBM62 FROM CLOSTRIDIUM THERMOCELLUM XYL5A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2YFU PDB ENTRY 2YFU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.8 0.2 M TRI-SODIUM CITRATE, PH 4.8 .
Crystal Properties Matthews coefficient Solvent content 4.92 75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 191.801 α = 90 b = 191.801 β = 90 c = 191.801 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX10.1 SRS PX10.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 44 100 0.11 18.2 10.5 28579 2 14
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 100 0.54 4.6 10.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2YFU 1.8 36.91 27109 1427 99.84 0.16448 0.16366 0.1643 0.18032 0.1798 RANDOM 14.91
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.07 r_dihedral_angle_4_deg 12.259 r_dihedral_angle_3_deg 10.619 r_dihedral_angle_1_deg 5.583 r_scangle_it 3.218 r_scbond_it 2.058 r_mcangle_it 1.379 r_angle_refined_deg 1.292 r_mcbond_it 0.757 r_chiral_restr 0.097
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.07 r_dihedral_angle_4_deg 12.259 r_dihedral_angle_3_deg 10.619 r_dihedral_angle_1_deg 5.583 r_scangle_it 3.218 r_scbond_it 2.058 r_mcangle_it 1.379 r_angle_refined_deg 1.292 r_mcbond_it 0.757 r_chiral_restr 0.097 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1058 Nucleic Acid Atoms Solvent Atoms 134 Heterogen Atoms 61
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling AMoRE phasing