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The heterotrimeric complex of Kluyveromyces lactis Scm3, Cse4 and H4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EQZ PDB ENTRY 1EQZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 0.1 M SODIUM CITRATE, PH4.5, 6% PEG 4000, AND 0.1 M SODIUM IODIDE
Crystal Properties Matthews coefficient Solvent content 2.59 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.723 α = 90 b = 65.53 β = 90 c = 121.097 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 315 MIRRORS 2010-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 94.7 0.08 17 4.1 11636 1.5 47.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 55.3 0.64 1.5 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1EQZ 2.32 50 11073 555 97.9 0.22195 0.22026 0.2146 0.25712 0.2552 RANDOM 50.054
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.7 3.52 -0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.275 r_dihedral_angle_3_deg 21.359 r_dihedral_angle_4_deg 12.805 r_dihedral_angle_1_deg 5.781 r_scangle_it 4.163 r_scbond_it 2.409 r_angle_refined_deg 1.423 r_mcangle_it 1.356 r_mcbond_it 0.673 r_chiral_restr 0.106
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.275 r_dihedral_angle_3_deg 21.359 r_dihedral_angle_4_deg 12.805 r_dihedral_angle_1_deg 5.781 r_scangle_it 4.163 r_scbond_it 2.409 r_angle_refined_deg 1.423 r_mcangle_it 1.356 r_mcbond_it 0.673 r_chiral_restr 0.106 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1636 Nucleic Acid Atoms Solvent Atoms 58 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing