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GALACTOSIDASE DOMAIN OF ALPHA-GALACTOSIDASE-SUCROSE KINASE, AGASK, in complex with galactose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 14% PEG 8000, 0.1M HEPES PH 7.5, PROTEIN CONCENTRATION 7MG/ML
Crystal Properties Matthews coefficient Solvent content 2.84 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.016 α = 90 b = 111.603 β = 90 c = 155.29 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2010-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 47 98.6 0.09 11.8 5.2 198265 7.99
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.42 98.1 0.47 3 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.35 46.97 188194 10028 99.82 0.12524 0.12436 0.14171 0.1706 RANDOM 13.067
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.53 -0.01 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.871 r_dihedral_angle_4_deg 16.39 r_dihedral_angle_3_deg 11.359 r_dihedral_angle_1_deg 6.872 r_scangle_it 3.257 r_scbond_it 2.12 r_angle_refined_deg 1.539 r_mcangle_it 1.521 r_angle_other_deg 1.093 r_mcbond_it 0.908
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.871 r_dihedral_angle_4_deg 16.39 r_dihedral_angle_3_deg 11.359 r_dihedral_angle_1_deg 6.872 r_scangle_it 3.257 r_scbond_it 2.12 r_angle_refined_deg 1.539 r_mcangle_it 1.521 r_angle_other_deg 1.093 r_mcbond_it 0.908 r_mcbond_other 0.301 r_chiral_restr 0.093 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5714 Nucleic Acid Atoms Solvent Atoms 1071 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling REFMAC phasing