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Human Myotubularin related protein 6 (MTMR6)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZSQ PDB ENTRY 1ZSQ
Crystallization Crystal Properties Matthews coefficient Solvent content 3.99 69.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.735 α = 90 b = 85.735 β = 90 c = 448.446 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2009-09-24 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 29.77 99.7 0.1 15.1 13.4 29729 -3 69.85
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.79 99.8 0.73 3.2 14
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT PDB ENTRY 1ZSQ 2.65 29.77 29646 1503 99.61 0.2591 0.2575 0.2824 0.2882 0.3145 RANDOM 106.75
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -15.3526 -15.3526 30.7051
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 3.27 t_omega_torsion 2.52 t_angle_deg 1.05 t_bond_d 0.009 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 3.27 t_omega_torsion 2.52 t_angle_deg 1.05 t_bond_d 0.009 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3901 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms 5
Software Software Software Name Purpose XDS data reduction SCALA data scaling SHARP phasing PHASER phasing BUSTER refinement