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STRUCTURE OF AN N-TERMINAL NUCLEOPHILE (NTN) HYDROLASE, OAT2, IN COMPLEX WITH GLUTAMATE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1VZ6 PDB ENTRY 1VZ6, CHAIN A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 290 1.4M AMMONIUM SULPHATE, 100MM N-ACETYL -L-GLUTAMATE, 200MM NACL, 100MM TRIS HCL PH 7.5 .
Crystal Properties Matthews coefficient Solvent content 2.43 49.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.22 α = 90 b = 73.424 β = 93.26 c = 172.327 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD OXFORD DIFFRACTION MULTI-LAYER OPTIC 2006-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION NOVA 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 61.12 96 0.1 1 60743 14.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1VZ6, CHAIN A 2.7 61.12 40637 2209 96 0.218 0.218 0.2142 0.236 0.2556 RANDOM 12.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.83 -0.43 1.1 -0.28
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 25.9 c_improper_angle_d 1.78 c_angle_deg 1.7 c_bond_d 0.015 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 25.9 c_improper_angle_d 1.78 c_angle_deg 1.7 c_bond_d 0.015 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot c_mcbond_it c_mcangle_it c_scbond_it c_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11206 Nucleic Acid Atoms Solvent Atoms 419 Heterogen Atoms 26
Software Software Software Name Purpose CNS refinement CrysalisPro data reduction CrysalisPro data scaling