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Structure of domains 6 and 7 of the mouse complement regulator Factor H
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2W80 PDB ENTRY 2W80 CHAIN A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 0.2M NACL 0.1M MES PH 6.0 20% PEG 2000 MME
Crystal Properties Matthews coefficient Solvent content 1.91 0.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.62 α = 90 b = 34.611 β = 90 c = 107.357 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2010-01-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 35.79 99.8 0.04 28.7 6.5 15809 22.15
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.58 1.59 99.7 0.48 3.2 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2W80 CHAIN A 1.58 29.09 15758 820 99.63 0.1915 0.1901 0.1949 0.2174 0.2292 RANDOM 25.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.78 1.7137 3.0663
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 15 t_omega_torsion 4.25 t_angle_deg 1.07 t_bond_d 0.009 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 15 t_omega_torsion 4.25 t_angle_deg 1.07 t_bond_d 0.009 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1000 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms 4
Software Software Software Name Purpose BUSTER refinement xia2 data reduction xia2 data scaling PHASER phasing