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Nitrate X-ray induced reduction on HEWL crystals (28.6 MGy)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2W1L PDB ENTRY 2W1L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.7 200 MM SODIUM ACETATE BUFFER PH 4.7, 10% W/V NACL.
Crystal Properties Matthews coefficient Solvent content 2.05 39.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.34 α = 90 b = 78.34 β = 90 c = 38.75 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2010-05-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 35 99.4 0.09 5.6 6 8542 1.1 23.262
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 98.8 0.46 1.1 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2W1L 2 55.39 8078 400 98.71 0.22027 0.21886 0.2182 0.24969 0.253 26.569
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.65 -0.65 1.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.421 r_dihedral_angle_4_deg 17.83 r_dihedral_angle_3_deg 15.209 r_dihedral_angle_1_deg 5.067 r_scangle_it 2.319 r_scbond_it 1.341 r_angle_refined_deg 0.996 r_mcangle_it 0.979 r_mcbond_it 0.494 r_chiral_restr 0.083
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.421 r_dihedral_angle_4_deg 17.83 r_dihedral_angle_3_deg 15.209 r_dihedral_angle_1_deg 5.067 r_scangle_it 2.319 r_scbond_it 1.341 r_angle_refined_deg 0.996 r_mcangle_it 0.979 r_mcbond_it 0.494 r_chiral_restr 0.083 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 32 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling MOLREP phasing