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HYDROXYNITRILE LYASE FROM HEVEA BRASILIENSIS COMPLEXED WITH RHODANIDE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YAS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 PH=7.5 2 % PEG 400, 2.0 M AMMONIUM SULFATE, 20 DEGREES.
Crystal Properties Matthews coefficient Solvent content 2.75 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.423 α = 90 b = 106.771 β = 90 c = 128.753 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 105 IMAGE PLATE MARRESEARCH 1998-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.72 14 98.7 0.066 18.9 3.8 34663
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.72 1.75 99.6 0.237 5.8 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER FREE R 1YAS 1.72 14 31167 3465 97.7 0.1544 0.1501 0.1577 0.1914 0.187 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 5 2049 2411.5
RMS Deviations Key Refinement Restraint Deviation s_similar_adp_cmpnt 0.054 s_non_zero_chiral_vol 0.052 s_zero_chiral_vol 0.05 s_anti_bump_dis_restr 0.027 s_from_restr_planes 0.026 s_angle_d 0.025 s_bond_d 0.008 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2057 Nucleic Acid Atoms Solvent Atoms 334 Heterogen Atoms 23
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELXL-97 model building SHELXL-97 refinement SHELXL-97 phasing