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CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS PHOSPHORIBOSYL ISOMERASE A (VARIANT D11N)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.1 M BIS-TRIS PH 7.5, 2.0M AMMONIUM SULFATE.
Crystal Properties Matthews coefficient Solvent content 4.6 73.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.534 α = 90 b = 141.534 β = 90 c = 141.534 γ = 90
Symmetry Space Group P 43 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-04-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 57.74 100 0.1 23.86 14.14 17377 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.52 100 0.72 3.12 14.44
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 100 16459 879 99.93 0.21315 0.21125 0.2437 0.2499 0.2831 RANDOM 36.264
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.652 r_dihedral_angle_4_deg 15.428 r_dihedral_angle_3_deg 15.077 r_dihedral_angle_1_deg 5.164 r_scangle_it 1.807 r_scbond_it 1.051 r_angle_refined_deg 1.04 r_mcangle_it 0.664 r_xyhbond_nbd_refined 0.403 r_mcbond_it 0.368
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.652 r_dihedral_angle_4_deg 15.428 r_dihedral_angle_3_deg 15.077 r_dihedral_angle_1_deg 5.164 r_scangle_it 1.807 r_scbond_it 1.051 r_angle_refined_deg 1.04 r_mcangle_it 0.664 r_xyhbond_nbd_refined 0.403 r_mcbond_it 0.368 r_nbtor_refined 0.299 r_nbd_refined 0.182 r_symmetry_vdw_refined 0.156 r_symmetry_hbond_refined 0.106 r_chiral_restr 0.066 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1743 Nucleic Acid Atoms Solvent Atoms 126 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing