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Crystal structure of Drosophila melanogaster kinesin-1 motor domain dimer-tail complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Y5W PDB ENTRY 2Y5W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 18% POLYETHYLENE GLYCOL-3350, 0.2M POTASSIUM CHLORIDE, 0.1M HEPES SODIUM PH 7.4
Crystal Properties Matthews coefficient Solvent content 2.15 42.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.765 α = 90 b = 190.714 β = 90 c = 145.98 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 PIXEL DECTRIS PILATUS 6M 2010-10-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 30 99.9 0.06 21.7 8.8 80517 2 41.383
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 99.6 0.37 5.5 8.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2Y5W 2.2 50 76402 4044 99.85 0.19787 0.19503 0.25192 0.2423 RANDOM 42.405
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 0.48 -0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.645 r_dihedral_angle_4_deg 21.024 r_dihedral_angle_3_deg 19.417 r_dihedral_angle_1_deg 6.973 r_scangle_it 5.733 r_scbond_it 3.546 r_mcangle_it 2.406 r_angle_refined_deg 1.785 r_mcbond_it 1.32 r_chiral_restr 0.134
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.645 r_dihedral_angle_4_deg 21.024 r_dihedral_angle_3_deg 19.417 r_dihedral_angle_1_deg 6.973 r_scangle_it 5.733 r_scbond_it 3.546 r_mcangle_it 2.406 r_angle_refined_deg 1.785 r_mcbond_it 1.32 r_chiral_restr 0.134 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10784 Nucleic Acid Atoms Solvent Atoms 656 Heterogen Atoms 112
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing