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Crystal structure of E496A mutant of the box pathway encoded ALDH from Burkholderia xenovorans LB400
Crystallization Crystal Properties Matthews coefficient Solvent content 2.34 47.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.05 α = 112.23 b = 68.13 β = 90.56 c = 78.08 γ = 111.69
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 38.08 95.9 0.09 7.2 2.3 117024 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.65 38.08 111124 5899 95.95 0.18298 0.1804 0.1808 0.23107 0.2316 RANDOM 12.956
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.02 -0.03 -0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.156 r_dihedral_angle_4_deg 21.277 r_dihedral_angle_3_deg 13.342 r_dihedral_angle_1_deg 6.176 r_scangle_it 4.922 r_scbond_it 3.314 r_angle_refined_deg 2.002 r_mcangle_it 1.89 r_mcbond_it 1.259 r_chiral_restr 0.158
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.156 r_dihedral_angle_4_deg 21.277 r_dihedral_angle_3_deg 13.342 r_dihedral_angle_1_deg 6.176 r_scangle_it 4.922 r_scbond_it 3.314 r_angle_refined_deg 2.002 r_mcangle_it 1.89 r_mcbond_it 1.259 r_chiral_restr 0.158 r_bond_refined_d 0.027 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7698 Nucleic Acid Atoms Solvent Atoms 1332 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement