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Rad18 ubiquitin ligase RING domain structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 15% PEG 3350, 100 MM AMMONIUM ACETATE, 100 MM BIS-TRIS PH 5.5 .
Crystal Properties Matthews coefficient Solvent content 2 38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.646 α = 90 b = 29.357 β = 125.05 c = 69.736 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 42.84 99.9 0.09 24.3 17.3 16560 3 18.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.89 99.2 0.62 2.5 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.8 42.86 15732 828 99.92 0.1774 0.17505 0.1989 0.22311 0.2342 RANDOM 22.531
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.63 0.27 -0.04 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.691 r_dihedral_angle_3_deg 13.431 r_dihedral_angle_4_deg 13.193 r_dihedral_angle_1_deg 5.122 r_scangle_it 3.252 r_scbond_it 1.931 r_angle_refined_deg 1.207 r_mcangle_it 1.08 r_mcbond_it 0.553 r_chiral_restr 0.089
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.691 r_dihedral_angle_3_deg 13.431 r_dihedral_angle_4_deg 13.193 r_dihedral_angle_1_deg 5.122 r_scangle_it 3.252 r_scbond_it 1.931 r_angle_refined_deg 1.207 r_mcangle_it 1.08 r_mcbond_it 0.553 r_chiral_restr 0.089 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1421 Nucleic Acid Atoms Solvent Atoms 102 Heterogen Atoms 4
Software Software Software Name Purpose XDS data reduction SCALA data scaling SHELX phasing PHASER phasing REFMAC refinement