☰ Navigation Tabs
Escherichia coli Immunoglobulin-binding protein EibD 391-438 FUSED TO GCN4 ADAPTORS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WPQ PDB ENTRY 2WPQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 20% (V/V) 2-PROPANOL, 200 MM SODIUM CITRATE, 100 MM HEPES PH 7.5.
Crystal Properties Matthews coefficient Solvent content 3.5 64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.67 α = 90 b = 36.67 β = 90 c = 228.58 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 38.1 98.8 0.07 9.77 2.81 4931 -3 49.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.97 99.1 0.25 4.09 2.92
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2WPQ 2.8 38.1 4374 541 100 0.26509 0.25967 0.2511 0.30775 0.3005 RANDOM 45.006
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.51 3.26 6.51 -9.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.714 r_dihedral_angle_4_deg 23.557 r_dihedral_angle_3_deg 22.194 r_scangle_it 3.608 r_dihedral_angle_1_deg 2.905 r_scbond_it 1.969 r_mcangle_it 1.489 r_angle_refined_deg 1.06 r_angle_other_deg 0.791 r_mcbond_it 0.751
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.714 r_dihedral_angle_4_deg 23.557 r_dihedral_angle_3_deg 22.194 r_scangle_it 3.608 r_dihedral_angle_1_deg 2.905 r_scbond_it 1.969 r_mcangle_it 1.489 r_angle_refined_deg 1.06 r_angle_other_deg 0.791 r_mcbond_it 0.751 r_mcbond_other 0.091 r_chiral_restr 0.051 r_bond_refined_d 0.013 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 869 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing