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Novel Sulfonylthiadiazoles with an Unusual Binding Mode as Partial Dual Peroxisome Proliferator-Activated Receptor (PPAR) gamma-delta Agonists with High Potency and In-vivo Efficacy
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other IN-HOUSE STRUCTURE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 PEG8000 10% - BISTRISPROPANE 40MM PH 7 - DTT 5MM - KCL 300MM - PROPANEDIOL 5% - EDTA 1MM
Crystal Properties Matthews coefficient Solvent content 2.89 57.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.471 α = 90 b = 93.213 β = 97.66 c = 97.422 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2006-02-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 96.67 93.2 0.08 10.8 1.9 17896 62.03
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.85 94.8 0.33 2.6 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT IN-HOUSE STRUCTURE 2.7 26.37 17858 1392 92.54 0.2159 0.2119 0.2271 0.2637 0.2763 RANDOM 48.68
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -9.6499 -5.5551 -1.746 11.3959
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 20.8 t_omega_torsion 2.48 t_angle_deg 1.21 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 20.8 t_omega_torsion 2.48 t_angle_deg 1.21 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4228 Nucleic Acid Atoms Solvent Atoms 31 Heterogen Atoms 104
Software Software Software Name Purpose BUSTER refinement MOSFLM data reduction SCALA data scaling AMoRE phasing