☰ Navigation Tabs
ChiA1 from Aspergillus fumigatus, apostructure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2UY2 PDB ENTRY 2UY2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.42M-0.58M NAH2PO4, 0.83M-0.74M K2HPO4
Crystal Properties Matthews coefficient Solvent content 3.8 68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.729 α = 90 b = 126.077 β = 90 c = 213.412 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4r 2007-04-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 100 0.1 10.8 4.1 69723 20.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 100 0.44 2.6 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2UY2 2 19.92 65776 3507 100 0.20356 0.20155 0.24174 0.2309 RANDOM 21.411
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.9 2.01 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.387 r_dihedral_angle_4_deg 14.406 r_dihedral_angle_3_deg 13.232 r_dihedral_angle_1_deg 5.969 r_scangle_it 3.231 r_scbond_it 2.086 r_angle_refined_deg 1.394 r_mcangle_it 1.321 r_mcbond_it 0.743 r_chiral_restr 0.105
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.387 r_dihedral_angle_4_deg 14.406 r_dihedral_angle_3_deg 13.232 r_dihedral_angle_1_deg 5.969 r_scangle_it 3.231 r_scbond_it 2.086 r_angle_refined_deg 1.394 r_mcangle_it 1.321 r_mcbond_it 0.743 r_chiral_restr 0.105 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4816 Nucleic Acid Atoms Solvent Atoms 603 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing