☰ Navigation Tabs
Crystal structure of the tellurite detoxification protein TehB from E. coli in complex with SAH
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2I6G PDB ENTRY 2I6G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 0.2M NAF, 22% PEG3350, 1MM SAM, pH 8
Crystal Properties Matthews coefficient Solvent content 2.14 42.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.362 α = 90 b = 55.644 β = 97.72 c = 59.42 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2010-08-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 28.2 98.9 0.06 16.1 5.3 69781 6 19.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.48 1.56 96.2 0.43 2.7 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2I6G 1.48 28.26 66104 3456 98.68 0.17337 0.17029 0.1694 0.22976 0.2281 RANDOM 25.87
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.32 -0.06 2.55 -1.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.09 r_dihedral_angle_4_deg 14.029 r_dihedral_angle_3_deg 12.848 r_scangle_it 6.933 r_dihedral_angle_1_deg 6.577 r_scbond_it 5.11 r_mcangle_it 3.209 r_rigid_bond_restr 2.593 r_mcbond_it 2.167 r_angle_refined_deg 1.912
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.09 r_dihedral_angle_4_deg 14.029 r_dihedral_angle_3_deg 12.848 r_scangle_it 6.933 r_dihedral_angle_1_deg 6.577 r_scbond_it 5.11 r_mcangle_it 3.209 r_rigid_bond_restr 2.593 r_mcbond_it 2.167 r_angle_refined_deg 1.912 r_chiral_restr 0.133 r_bond_refined_d 0.021 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3146 Nucleic Acid Atoms Solvent Atoms 512 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing