☰ Navigation Tabs
Pseudomonas aeruginosa Azurin with mutated metal-binding loop sequence (CAAHAAM), chemically reduced, pH4.2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FS9 PDB ENTRY 3FS9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.2 293 0.1M POTASSIUM THIOCYANATE, 30% PEG2000, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
Crystal Properties Matthews coefficient Solvent content 1.97 37.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.897 α = 90 b = 46.249 β = 90 c = 57.834 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 57.74 99.7 0.06 25.6 6.7 14745
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.68 97.7 0.21 7 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3FS9 1.6 36.13 13902 755 99.99 0.14325 0.14017 0.1543 0.20039 0.2097 RANDOM 11.911
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.2 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.782 r_dihedral_angle_3_deg 13.018 r_dihedral_angle_4_deg 9.509 r_dihedral_angle_1_deg 8.675 r_sphericity_free 8.288 r_scangle_it 4.426 r_scbond_it 3.342 r_sphericity_bonded 3.124 r_mcangle_it 2.391 r_mcbond_it 1.925
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.782 r_dihedral_angle_3_deg 13.018 r_dihedral_angle_4_deg 9.509 r_dihedral_angle_1_deg 8.675 r_sphericity_free 8.288 r_scangle_it 4.426 r_scbond_it 3.342 r_sphericity_bonded 3.124 r_mcangle_it 2.391 r_mcbond_it 1.925 r_angle_refined_deg 1.679 r_rigid_bond_restr 1.658 r_angle_other_deg 0.846 r_mcbond_other 0.635 r_symmetry_vdw_other 0.247 r_nbd_refined 0.224 r_nbd_other 0.192 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.17 r_symmetry_hbond_refined 0.167 r_symmetry_vdw_refined 0.153 r_chiral_restr 0.109 r_nbtor_other 0.086 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 927 Nucleic Acid Atoms Solvent Atoms 194 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling